J3_5J7L_067

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

5J7L|1|DA|U|34, 5J7L|1|DA|U|448, 5J7L|1|DA|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

5J7L|1|DA|C|32
5J7L|1|DA|C|33
5J7L|1|DA|U|34
5J7L|1|DA|G|35
*
5J7L|1|DA|C|445
5J7L|1|DA|G|446
5J7L|1|DA|A|447
5J7L|1|DA|U|448
5J7L|1|DA|A|449
5J7L|1|DA|G|450
5J7L|1|DA|U|451
5J7L|1|DA|G|452
5J7L|1|DA|A|453
5J7L|1|DA|A|454
5J7L|1|DA|C|455
5J7L|1|DA|C|456
5J7L|1|DA|A|457
5J7L|1|DA|G|458
5J7L|1|DA|U|459
5J7L|1|DA|A|460
5J7L|1|DA|C|461
*
5J7L|1|DA|G|468
5J7L|1|DA|G|469
5J7L|1|DA|A|470
5J7L|1|DA|A|471
5J7L|1|DA|A|472
5J7L|1|DA|G|473

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L34

Chain DE

50S ribosomal protein L4

Chain DR

50S ribosomal protein L20

Chain DU

50S ribosomal protein L23