J3_5J88_022

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

GAC*GAUAAGC*GAUUUC

Length

16 nucleotides

Bulged bases

5J88|1|CA|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J88|1|CA|G|55
5J88|1|CA|A|56
5J88|1|CA|C|57
*
5J88|1|CA|G|70
5J88|1|CA|A|71
5J88|1|CA|U|72
5J88|1|CA|A|73
5J88|1|CA|A|74
5J88|1|CA|G|75
5J88|1|CA|C|76
*
5J88|1|CA|G|110
5J88|1|CA|A|111
5J88|1|CA|U|112
5J88|1|CA|U|113
5J88|1|CA|U|114
5J88|1|CA|C|115

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L34

Chain CU

50S ribosomal protein L23

Chain CZ

50S ribosomal protein L29