J3_5J88_033

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

GGAAC*GUUGAU*AAUGAACC

Length

19 nucleotides

Bulged bases

5J88|1|CA|U|2833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J88|1|CA|G|2811
5J88|1|CA|G|2812
5J88|1|CA|A|2813
5J88|1|CA|A|2814
5J88|1|CA|C|2815
*
5J88|1|CA|G|2831
5J88|1|CA|U|2832
5J88|1|CA|U|2833
5J88|1|CA|G|2834
5J88|1|CA|A|2835
5J88|1|CA|U|2836
*
5J88|1|CA|A|2882
5J88|1|CA|A|2883
5J88|1|CA|U|2884
5J88|1|CA|G|2885
5J88|1|CA|A|2886
5J88|1|CA|A|2887
5J88|1|CA|C|2888
5J88|1|CA|C|2889

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C1

50S ribosomal protein L32

Chain CD

50S ribosomal protein L3

Chain CO

50S ribosomal protein L17

Chain CT

50S ribosomal protein L22