J3_5J88_038
3D structure
- PDB id
- 5J88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.32 Å
Loop
- Sequence
- CAG*CGAAC*GAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J88_038 not in the Motif Atlas
- Homologous match to J3_5J7L_039
- Geometric discrepancy: 0.0608
- The information below is about J3_5J7L_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.7
- Basepair signature
- cWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
5J88|1|DA|C|698
5J88|1|DA|A|699
5J88|1|DA|G|700
*
5J88|1|DA|C|732
5J88|1|DA|G|733
5J88|1|DA|A|734
5J88|1|DA|A|735
5J88|1|DA|C|736
*
5J88|1|DA|G|760
5J88|1|DA|A|761
5J88|1|DA|U|762
5J88|1|DA|G|763
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain DC
- 50S ribosomal protein L2
Coloring options: