J3_5J88_054
3D structure
- PDB id
- 5J88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.32 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 5J88|1|AA|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J88_054 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.0496
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5J88|1|AA|U|1116
5J88|1|AA|A|1117
5J88|1|AA|U|1118
*
5J88|1|AA|A|1155
5J88|1|AA|G|1156
5J88|1|AA|A|1157
5J88|1|AA|C|1158
5J88|1|AA|U|1159
5J88|1|AA|G|1160
5J88|1|AA|C|1161
*
5J88|1|AA|G|1175
5J88|1|AA|A|1176
5J88|1|AA|G|1177
5J88|1|AA|G|1178
5J88|1|AA|A|1179
5J88|1|AA|A|1180
5J88|1|AA|G|1181
5J88|1|AA|G|1182
5J88|1|AA|U|1183
5J88|1|AA|G|1184
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AB
- 30S ribosomal protein S2
- Chain AG
- 30S ribosomal protein S7
- Chain AI
- 30S ribosomal protein S9
- Chain AJ
- 30S ribosomal protein S10
- Chain AN
- 30S ribosomal protein S14
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