J3_5J88_063

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

GUGAUCUA*UGGGG*CAAUCAAAC

Length

22 nucleotides

Bulged bases

5J88|1|CA|U|686, 5J88|1|CA|A|789, 5J88|1|CA|U|790, 5J88|1|CA|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J88|1|CA|G|682
5J88|1|CA|U|683
5J88|1|CA|G|684
5J88|1|CA|A|685
5J88|1|CA|U|686
5J88|1|CA|C|687
5J88|1|CA|U|688
5J88|1|CA|A|689
*
5J88|1|CA|U|773
5J88|1|CA|G|774
5J88|1|CA|G|775
5J88|1|CA|G|776
5J88|1|CA|G|777
*
5J88|1|CA|C|787
5J88|1|CA|A|788
5J88|1|CA|A|789
5J88|1|CA|U|790
5J88|1|CA|C|791
5J88|1|CA|A|792
5J88|1|CA|A|793
5J88|1|CA|A|794
5J88|1|CA|C|795

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L34

Chain CC

50S ribosomal protein L2

Chain CE

50S ribosomal protein L4

Chain CT

50S ribosomal protein L22