J3_5J8A_016
3D structure
- PDB id
- 5J8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J8A_016 not in the Motif Atlas
- Homologous match to J3_5J7L_005
- Geometric discrepancy: 0.0141
- The information below is about J3_5J7L_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5J8A|1|BA|U|943
5J8A|1|BA|G|944
5J8A|1|BA|G|945
5J8A|1|BA|A|946
*
5J8A|1|BA|U|1235
5J8A|1|BA|A|1236
5J8A|1|BA|C|1237
*
5J8A|1|BA|G|1337
5J8A|1|BA|G|1338
5J8A|1|BA|A|1339
5J8A|1|BA|A|1340
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain BG
- 30S ribosomal protein S7
- Chain BI
- 30S ribosomal protein S9
- Chain BM
- 30S ribosomal protein S13
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