J3_5J8A_030

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J8A_030 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.0404

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

5J8A|1|CA|U|1344
5J8A|1|CA|C|1345
5J8A|1|CA|G|1346
5J8A|1|CA|A|1347
5J8A|1|CA|C|1348
5J8A|1|CA|C|1349
*
5J8A|1|CA|G|1382
5J8A|1|CA|A|1383
5J8A|1|CA|A|1384
5J8A|1|CA|A|1385
*
5J8A|1|CA|U|1402
5J8A|1|CA|A|1403

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CU

50S ribosomal protein L23