J3_5J8A_033

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

5J8A|1|CA|A|2518, 5J8A|1|CA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J8A_033 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0533

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

5J8A|1|CA|C|2517
5J8A|1|CA|A|2518
5J8A|1|CA|U|2519
5J8A|1|CA|C|2520
*
5J8A|1|CA|G|2545
5J8A|1|CA|U|2546
5J8A|1|CA|A|2547
*
5J8A|1|CA|U|2561
5J8A|1|CA|U|2562
5J8A|1|CA|U|2563
5J8A|1|CA|A|2564
5J8A|1|CA|A|2565
5J8A|1|CA|A|2566
5J8A|1|CA|G|2567

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CD

50S ribosomal protein L3

Chain CL

50S ribosomal protein L14