J3_5J8A_039
3D structure
- PDB id
- 5J8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 5J8A|1|DA|U|686, 5J8A|1|DA|A|792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J8A_039 not in the Motif Atlas
- Homologous match to J3_5J7L_038
- Geometric discrepancy: 0.0345
- The information below is about J3_5J7L_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5J8A|1|DA|U|683
5J8A|1|DA|G|684
5J8A|1|DA|A|685
5J8A|1|DA|U|686
5J8A|1|DA|C|687
5J8A|1|DA|U|688
5J8A|1|DA|A|689
*
5J8A|1|DA|U|773
5J8A|1|DA|G|774
5J8A|1|DA|G|775
*
5J8A|1|DA|C|791
5J8A|1|DA|A|792
5J8A|1|DA|A|793
5J8A|1|DA|A|794
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D3
- 50S ribosomal protein L34
- Chain DC
- 50S ribosomal protein L2
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