J3_5J8A_040

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J8A_040 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.032

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5J8A|1|DA|C|698
5J8A|1|DA|A|699
5J8A|1|DA|G|700
*
5J8A|1|DA|C|732
5J8A|1|DA|G|733
5J8A|1|DA|A|734
5J8A|1|DA|A|735
5J8A|1|DA|C|736
*
5J8A|1|DA|G|760
5J8A|1|DA|A|761
5J8A|1|DA|U|762
5J8A|1|DA|G|763

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2