J3_5J8A_059

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5J8A|1|BA|U|1212, 5J8A|1|BA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J8A_059 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.0237

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5J8A|1|BA|C|990
5J8A|1|BA|U|991
5J8A|1|BA|U|992
5J8A|1|BA|G|993
5J8A|1|BA|A|994
5J8A|1|BA|C|995
5J8A|1|BA|A|996
5J8A|1|BA|U|997
*
5J8A|1|BA|A|1044
5J8A|1|BA|C|1045
5J8A|1|BA|A|1046
5J8A|1|BA|G|1047
*
5J8A|1|BA|C|1210
5J8A|1|BA|U|1211
5J8A|1|BA|U|1212
5J8A|1|BA|A|1213
5J8A|1|BA|C|1214
5J8A|1|BA|G|1215

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BN

30S ribosomal protein S14