J3_5J91_038

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

5J91|1|DA|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J91_038 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.0279

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

5J91|1|DA|A|56
5J91|1|DA|C|57
*
5J91|1|DA|G|70
5J91|1|DA|A|71
5J91|1|DA|U|72
5J91|1|DA|A|73
5J91|1|DA|A|74
5J91|1|DA|G|75
5J91|1|DA|C|76
*
5J91|1|DA|G|110
5J91|1|DA|A|111
5J91|1|DA|U|112
5J91|1|DA|U|113
5J91|1|DA|U|114

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L34

Chain DU

50S ribosomal protein L23

Chain DZ

50S ribosomal protein L29