J3_5JC9_025

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5JC9|1|CA|U|686, 5JC9|1|CA|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JC9_025 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0695

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5JC9|1|CA|U|683
5JC9|1|CA|G|684
5JC9|1|CA|A|685
5JC9|1|CA|U|686
5JC9|1|CA|C|687
5JC9|1|CA|U|688
5JC9|1|CA|A|689
*
5JC9|1|CA|U|773
5JC9|1|CA|G|774
5JC9|1|CA|G|775
*
5JC9|1|CA|C|791
5JC9|1|CA|A|792
5JC9|1|CA|A|793
5JC9|1|CA|A|794

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L34

Chain CC

50S ribosomal protein L2