J3_5JC9_026

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JC9_026 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.081

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5JC9|1|CA|C|698
5JC9|1|CA|A|699
5JC9|1|CA|G|700
*
5JC9|1|CA|C|732
5JC9|1|CA|G|733
5JC9|1|CA|A|734
5JC9|1|CA|A|735
5JC9|1|CA|C|736
*
5JC9|1|CA|G|760
5JC9|1|CA|A|761
5JC9|1|CA|U|762
5JC9|1|CA|G|763

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein L2