J3_5JC9_047
3D structure
- PDB id
- 5JC9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.03 Å
Loop
- Sequence
- CAUC*GUA*UUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 5JC9|1|DA|A|2518, 5JC9|1|DA|U|2519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JC9_047 not in the Motif Atlas
- Homologous match to J3_5J7L_046
- Geometric discrepancy: 0.0275
- The information below is about J3_5J7L_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.5
- Basepair signature
- cWW-tWH-cHW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5JC9|1|DA|C|2517
5JC9|1|DA|A|2518
5JC9|1|DA|U|2519
5JC9|1|DA|C|2520
*
5JC9|1|DA|G|2545
5JC9|1|DA|U|2546
5JC9|1|DA|A|2547
*
5JC9|1|DA|U|2561
5JC9|1|DA|U|2562
5JC9|1|DA|U|2563
5JC9|1|DA|A|2564
5JC9|1|DA|A|2565
5JC9|1|DA|A|2566
5JC9|1|DA|G|2567
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D5
- 50S ribosomal protein L36
- Chain DD
- 50S ribosomal protein L3
- Chain DL
- 50S ribosomal protein L14
Coloring options: