J3_5JC9_061

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5JC9|1|BA|U|1212, 5JC9|1|BA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JC9_061 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.0418

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5JC9|1|BA|C|990
5JC9|1|BA|U|991
5JC9|1|BA|U|992
5JC9|1|BA|G|993
5JC9|1|BA|A|994
5JC9|1|BA|C|995
5JC9|1|BA|A|996
5JC9|1|BA|U|997
*
5JC9|1|BA|A|1044
5JC9|1|BA|C|1045
5JC9|1|BA|A|1046
5JC9|1|BA|G|1047
*
5JC9|1|BA|C|1210
5JC9|1|BA|U|1211
5JC9|1|BA|U|1212
5JC9|1|BA|A|1213
5JC9|1|BA|C|1214
5JC9|1|BA|G|1215

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BN

30S ribosomal protein S14