J3_5JPQ_002

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

AUCA*UAACUACUG*CAUUU

Length

18 nucleotides

Bulged bases

5JPQ|1|2|C|934

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JPQ_002 not in the Motif Atlas

Homologous match to J3_4V88_033

Geometric discrepancy: 0.3137

The information below is about J3_4V88_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38616.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

5JPQ|1|2|A|881
5JPQ|1|2|U|882
5JPQ|1|2|C|883
5JPQ|1|2|A|884
*
5JPQ|1|2|U|928
5JPQ|1|2|A|929
5JPQ|1|2|A|930
5JPQ|1|2|C|931
5JPQ|1|2|U|932
5JPQ|1|2|A|933
5JPQ|1|2|C|934
5JPQ|1|2|U|935
5JPQ|1|2|G|936
*
5JPQ|1|2|C|943
5JPQ|1|2|A|944
5JPQ|1|2|U|945
5JPQ|1|2|U|946
5JPQ|1|2|U|947

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain g

KRR1 small subunit processome component

Chain o

eS1

Chain w

uS11