J3_5JPQ_003

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

5JPQ|1|2|G|1584

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JPQ|1|2|C|1161
5JPQ|1|2|C|1162
5JPQ|1|2|A|1163
5JPQ|1|2|G|1164
*
5JPQ|1|2|C|1581
5JPQ|1|2|U|1582
5JPQ|1|2|A|1583
5JPQ|1|2|G|1584
5JPQ|1|2|U|1585
5JPQ|1|2|A|1586
5JPQ|1|2|A|1587
*
5JPQ|1|2|U|1609
5JPQ|1|2|G|1610
5JPQ|1|2|A|1611
5JPQ|1|2|U|1612
5JPQ|1|2|U|1613
5JPQ|1|2|A|1614
5JPQ|1|2|C|1615
5JPQ|1|2|G|1616

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

eS28

Chain J

WD40 domain proteins

Chain c

Putative U3 small nucleolar ribonucleoprotein

Chain q

uS7

Chain x

uS9