J3_5JPQ_005

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

CGCUCU*GGC*GUAUAG

Length

15 nucleotides

Bulged bases

5JPQ|1|3|U|178

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JPQ|1|3|C|132
5JPQ|1|3|G|133
5JPQ|1|3|C|134
5JPQ|1|3|U|135
5JPQ|1|3|C|136
5JPQ|1|3|U|137
*
5JPQ|1|3|G|150
5JPQ|1|3|G|151
5JPQ|1|3|C|152
*
5JPQ|1|3|G|177
5JPQ|1|3|U|178
5JPQ|1|3|A|179
5JPQ|1|3|U|180
5JPQ|1|3|A|181
5JPQ|1|3|G|182

Current chains

Chain 3

U3 RNA

Nearby chains

Chain Y

rrp9