J3_5JPQ_006

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

AGAUUAAGCCAU*AGGCGCGCAAAUUAC*GUAGU

Length

32 nucleotides

Bulged bases

5JPQ|1|2|A|47, 5JPQ|1|2|A|438

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JPQ|1|2|A|41
5JPQ|1|2|G|42
5JPQ|1|2|A|43
5JPQ|1|2|U|44
5JPQ|1|2|U|45
5JPQ|1|2|A|46
5JPQ|1|2|A|47
5JPQ|1|2|G|48
5JPQ|1|2|C|49
5JPQ|1|2|C|50
5JPQ|1|2|A|51
5JPQ|1|2|U|52
*
5JPQ|1|2|A|428
5JPQ|1|2|G|429
5JPQ|1|2|G|430
5JPQ|1|2|C|431
5JPQ|1|2|G|432
5JPQ|1|2|C|433
5JPQ|1|2|G|434
5JPQ|1|2|C|435
5JPQ|1|2|A|436
5JPQ|1|2|A|437
5JPQ|1|2|A|438
5JPQ|1|2|U|439
5JPQ|1|2|U|440
5JPQ|1|2|A|441
5JPQ|1|2|C|442
*
5JPQ|1|2|G|462
5JPQ|1|2|U|463
5JPQ|1|2|A|464
5JPQ|1|2|G|465
5JPQ|1|2|U|466

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 0

eS24

Chain p

eS4