J3_5JPQ_007

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

CUAGG*CUUACG*CAAAG

Length

16 nucleotides

Bulged bases

5JPQ|1|2|A|1093

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JPQ|1|2|C|1037
5JPQ|1|2|U|1038
5JPQ|1|2|A|1039
5JPQ|1|2|G|1040
5JPQ|1|2|G|1041
*
5JPQ|1|2|C|1078
5JPQ|1|2|U|1079
5JPQ|1|2|U|1080
5JPQ|1|2|A|1081
5JPQ|1|2|C|1082
5JPQ|1|2|G|1083
*
5JPQ|1|2|C|1090
5JPQ|1|2|A|1091
5JPQ|1|2|A|1092
5JPQ|1|2|A|1093
5JPQ|1|2|G|1094

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain d

Utp24

Chain m

WD40 domain proteins

Chain z

uS8