J3_5JTE_019

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JTE_019 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.0987

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

5JTE|1|BA|U|1344
5JTE|1|BA|C|1345
5JTE|1|BA|G|1346
5JTE|1|BA|A|1347
5JTE|1|BA|C|1348
5JTE|1|BA|C|1349
*
5JTE|1|BA|G|1382
5JTE|1|BA|A|1383
5JTE|1|BA|A|1384
5JTE|1|BA|A|1385
*
5JTE|1|BA|U|1402
5JTE|1|BA|A|1403

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BT

50S ribosomal protein L23