J3_5JTE_022

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

5JTE|1|BA|A|2518, 5JTE|1|BA|U|2519, 5JTE|1|BA|A|2564

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JTE_022 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.1277

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

5JTE|1|BA|C|2517
5JTE|1|BA|A|2518
5JTE|1|BA|U|2519
5JTE|1|BA|C|2520
*
5JTE|1|BA|G|2545
5JTE|1|BA|U|2546
5JTE|1|BA|A|2547
*
5JTE|1|BA|U|2561
5JTE|1|BA|U|2562
5JTE|1|BA|U|2563
5JTE|1|BA|A|2564
5JTE|1|BA|A|2565
5JTE|1|BA|A|2566
5JTE|1|BA|G|2567

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L14