J3_5JU8_006

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JU8_006 not in the Motif Atlas

Homologous match to J3_6CZR_021

Geometric discrepancy: 0.2226

The information below is about J3_6CZR_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JU8|1|AA|C|990
5JU8|1|AA|U|991
5JU8|1|AA|U|992
5JU8|1|AA|G|993
*
5JU8|1|AA|C|1045
5JU8|1|AA|A|1046
5JU8|1|AA|G|1047
*
5JU8|1|AA|C|1210
5JU8|1|AA|U|1211
5JU8|1|AA|U|1212
5JU8|1|AA|A|1213
5JU8|1|AA|C|1214
5JU8|1|AA|G|1215

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AN

30S ribosomal protein S14