J3_5JU8_013
3D structure
- PDB id
- 5JU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 5JU8|1|BA|U|686, 5JU8|1|BA|A|792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JU8_013 not in the Motif Atlas
- Homologous match to J3_5J7L_038
- Geometric discrepancy: 0.1199
- The information below is about J3_5J7L_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5JU8|1|BA|U|683
5JU8|1|BA|G|684
5JU8|1|BA|A|685
5JU8|1|BA|U|686
5JU8|1|BA|C|687
5JU8|1|BA|U|688
5JU8|1|BA|A|689
*
5JU8|1|BA|U|773
5JU8|1|BA|G|774
5JU8|1|BA|G|775
*
5JU8|1|BA|C|791
5JU8|1|BA|A|792
5JU8|1|BA|A|793
5JU8|1|BA|A|794
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B2
- 50S ribosomal protein L34
- Chain B5
- ErmBL
- Chain BC
- 50S ribosomal protein L2
- Chain BE
- 50S ribosomal protein L4
Coloring options: