J3_5JU8_029

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JU8_029 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0955

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

5JU8|1|AA|C|936
5JU8|1|AA|A|937
5JU8|1|AA|A|938
5JU8|1|AA|G|939
*
5JU8|1|AA|C|1344
5JU8|1|AA|U|1345
5JU8|1|AA|A|1346
5JU8|1|AA|G|1347
5JU8|1|AA|U|1348
5JU8|1|AA|A|1349
5JU8|1|AA|A|1350
*
5JU8|1|AA|U|1372
5JU8|1|AA|G|1373
5JU8|1|AA|A|1374
5JU8|1|AA|A|1375
5JU8|1|AA|U|1376
5JU8|1|AA|A|1377
5JU8|1|AA|C|1378
5JU8|1|AA|G|1379

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AI

30S ribosomal protein S9

Chain AY

Transfer RNA; tRNA