J3_5JUU_008

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCAGAC*GGGUGG*CUUAGACG

Length

20 nucleotides

Bulged bases

5JUU|1|A|A|1217, 5JUU|1|A|G|1445, 5JUU|1|A|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUU|1|A|C|1215
5JUU|1|A|C|1216
5JUU|1|A|A|1217
5JUU|1|A|G|1218
5JUU|1|A|A|1219
5JUU|1|A|C|1220
*
5JUU|1|A|G|1263
5JUU|1|A|G|1264
5JUU|1|A|G|1265
5JUU|1|A|U|1266
5JUU|1|A|G|1267
5JUU|1|A|G|1268
*
5JUU|1|A|C|1441
5JUU|1|A|U|1442
5JUU|1|A|U|1443
5JUU|1|A|A|1444
5JUU|1|A|G|1445
5JUU|1|A|A|1446
5JUU|1|A|C|1447
5JUU|1|A|G|1448

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain AC

uS14 (yeast S29)

Chain CC

eS31 (yeast S31)

Chain DC

yeast eEF2

Chain HB

eS10 (yeast S10)