3D structure

PDB id
5JUU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
UU*AGAAG*CAUUUGA
Length
14 nucleotides
Bulged bases
5JUU|1|B|A|1065, 5JUU|1|B|U|1095
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5JUU_018 not in the Motif Atlas
Homologous match to J3_5TBW_006
Geometric discrepancy: 0.2498
The information below is about J3_5TBW_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11066.3
Basepair signature
cWW-cSS-F-F-F-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

5JUU|1|B|U|986
5JUU|1|B|U|987
*
5JUU|1|B|A|1062
5JUU|1|B|G|1063
5JUU|1|B|A|1064
5JUU|1|B|A|1065
5JUU|1|B|G|1066
*
5JUU|1|B|C|1092
5JUU|1|B|A|1093
5JUU|1|B|U|1094
5JUU|1|B|U|1095
5JUU|1|B|U|1096
5JUU|1|B|G|1097
5JUU|1|B|A|1098

Current chains

Chain B
25S ribosomal RNA

Nearby chains

Chain GA
eL29 (yeast L29)
Chain K
uL30 (yeast L7)
Chain Y
eL21 (yeast L21)

Coloring options:


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