J3_5JUU_018
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 5JUU|1|B|A|1065, 5JUU|1|B|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUU_018 not in the Motif Atlas
- Homologous match to J3_5TBW_006
- Geometric discrepancy: 0.2498
- The information below is about J3_5TBW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11066.3
- Basepair signature
- cWW-cSS-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5JUU|1|B|U|986
5JUU|1|B|U|987
*
5JUU|1|B|A|1062
5JUU|1|B|G|1063
5JUU|1|B|A|1064
5JUU|1|B|A|1065
5JUU|1|B|G|1066
*
5JUU|1|B|C|1092
5JUU|1|B|A|1093
5JUU|1|B|U|1094
5JUU|1|B|U|1095
5JUU|1|B|U|1096
5JUU|1|B|G|1097
5JUU|1|B|A|1098
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain GA
- eL29 (yeast L29)
- Chain K
- uL30 (yeast L7)
- Chain Y
- eL21 (yeast L21)
Coloring options: