J3_5JUU_020

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUGAAGUGGG*UCCAA*UCUAG

Length

20 nucleotides

Bulged bases

5JUU|1|B|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUU|1|B|C|1478
5JUU|1|B|U|1479
5JUU|1|B|G|1480
5JUU|1|B|A|1481
5JUU|1|B|A|1482
5JUU|1|B|G|1483
5JUU|1|B|U|1484
5JUU|1|B|G|1485
5JUU|1|B|G|1486
5JUU|1|B|G|1487
*
5JUU|1|B|U|1855
5JUU|1|B|C|1856
5JUU|1|B|C|1857
5JUU|1|B|A|1858
5JUU|1|B|A|1859
*
5JUU|1|B|U|1871
5JUU|1|B|C|1872
5JUU|1|B|U|1873
5JUU|1|B|A|1874
5JUU|1|B|G|1875

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain IA

eL31 (yeast L31)

Chain LA

eL34 (yeast L34)

Chain W

eL19 (yeast L19)