J3_5JUU_021

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAAAG*CUGAUAAC*GUC

Length

16 nucleotides

Bulged bases

5JUU|1|B|U|1840, 5JUU|1|B|A|1841, 5JUU|1|B|A|1842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUU|1|B|G|1488
5JUU|1|B|A|1489
5JUU|1|B|A|1490
5JUU|1|B|A|1491
5JUU|1|B|G|1492
*
5JUU|1|B|C|1836
5JUU|1|B|U|1837
5JUU|1|B|G|1838
5JUU|1|B|A|1839
5JUU|1|B|U|1840
5JUU|1|B|A|1841
5JUU|1|B|A|1842
5JUU|1|B|C|1843
*
5JUU|1|B|G|1852
5JUU|1|B|U|1853
5JUU|1|B|C|1854

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain LA

eL34 (yeast L34)

Chain OA

eL37 (yeast L37)

Chain QA

eL39 (yeast L39)