J3_5JUU_028
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CAU*AGAUG*CUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUU_028 not in the Motif Atlas
- Homologous match to J3_5TBW_015
- Geometric discrepancy: 0.2011
- The information below is about J3_5TBW_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_48314.1
- Basepair signature
- cWW-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
5JUU|1|B|C|3298
5JUU|1|B|A|3299
5JUU|1|B|U|3300
*
5JUU|1|B|A|3314
5JUU|1|B|G|3315
5JUU|1|B|A|3316
5JUU|1|B|U|3317
5JUU|1|B|G|3318
*
5JUU|1|B|C|3388
5JUU|1|B|U|3389
5JUU|1|B|G|3390
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain G
- uL3 (yeast L3)
- Chain IA
- eL31 (yeast L31)
- Chain U
- uL22 (yeast L17)
Coloring options: