J3_5JUU_030

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAG*CAGC*GUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUU|1|EC|C|6895
5JUU|1|EC|A|6896
5JUU|1|EC|G|6897
*
5JUU|1|EC|C|6917
5JUU|1|EC|A|6918
5JUU|1|EC|G|6919
5JUU|1|EC|C|6920
*
5JUU|1|EC|G|6933
5JUU|1|EC|U|6934
5JUU|1|EC|G|6935

Current chains

Chain EC

IRES

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain PB

uS13 (yeast S18)