J3_5JUU_033
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 5JUU|1|A|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUU_033 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.1497
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5JUU|1|A|U|633
5JUU|1|A|G|634
5JUU|1|A|A|635
*
5JUU|1|A|U|861
5JUU|1|A|A|862
5JUU|1|A|A|863
5JUU|1|A|U|864
5JUU|1|A|A|865
5JUU|1|A|G|866
*
5JUU|1|A|C|962
5JUU|1|A|A|963
5JUU|1|A|U|964
5JUU|1|A|U|965
5JUU|1|A|A|966
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain EB
- eS7 (yeast S7)
- Chain IB
- uS17 (yeast S11)
- Chain KB
- uS15 (yeast S13)
- Chain TB
- uS8 (yeast S22)
- Chain UB
- uS12 (yeast S23)
- Chain YB
- eS27 (yeast S27)
Coloring options: