J3_5JUU_034
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AGAG*CAG*UCGAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUU_034 not in the Motif Atlas
- Homologous match to J3_8C3A_035
- Geometric discrepancy: 0.2265
- The information below is about J3_8C3A_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_00811.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5JUU|1|A|A|760
5JUU|1|A|G|761
5JUU|1|A|A|762
5JUU|1|A|G|763
*
5JUU|1|A|C|773
5JUU|1|A|A|774
5JUU|1|A|G|775
*
5JUU|1|A|U|785
5JUU|1|A|C|786
5JUU|1|A|G|787
5JUU|1|A|A|788
5JUU|1|A|A|789
5JUU|1|A|U|790
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain BB
- eS4 (yeast S4)
- Chain GB
- uS4 (yeast S9)
- Chain VB
- eS24 (yeast S24)
Coloring options: