J3_5JUU_042
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGG*CCACCAU
- Length
- 24 nucleotides
- Bulged bases
- 5JUU|1|B|C|1556, 5JUU|1|B|A|1558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUU_042 not in the Motif Atlas
- Homologous match to J3_9PN5_015
- Geometric discrepancy: 0.4479
- The information below is about J3_9PN5_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_53783.2
- Basepair signature
- cWW-tSH-tHW-F-tWW-F-tHS-F-cWW-cWW-F-tWW-F
- Number of instances in this motif group
- 3
Unit IDs
5JUU|1|B|A|1537
5JUU|1|B|G|1538
5JUU|1|B|A|1539
5JUU|1|B|U|1540
5JUU|1|B|G|1541
5JUU|1|B|G|1542
*
5JUU|1|B|C|1551
5JUU|1|B|G|1552
5JUU|1|B|U|1553
5JUU|1|B|U|1554
5JUU|1|B|U|1555
5JUU|1|B|C|1556
5JUU|1|B|A|1557
5JUU|1|B|A|1558
5JUU|1|B|A|1559
5JUU|1|B|G|1560
5JUU|1|B|G|1561
*
5JUU|1|B|C|1578
5JUU|1|B|C|1579
5JUU|1|B|A|1580
5JUU|1|B|C|1581
5JUU|1|B|C|1582
5JUU|1|B|A|1583
5JUU|1|B|U|1584
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CA
- uL23 (yeast L25)
- Chain F
- uL2 (yeast L2)
- Chain L
- eL8 (yeast L8)
- Chain OA
- eL37 (yeast L37)
- Chain S
- eL15 (yeast L15)
Coloring options: