J3_5JVH_008

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CUGC*GCUAAGGUAG*CGAAAG

Length

20 nucleotides

Bulged bases

5JVH|1|X|A|1954

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JVH|1|X|C|1825
5JVH|1|X|U|1826
5JVH|1|X|G|1827
5JVH|1|X|C|1828
*
5JVH|1|X|G|1887
5JVH|1|X|C|1888
5JVH|1|X|U|1909
5JVH|1|X|A|1910
5JVH|1|X|A|1911
5JVH|1|X|G|1912
5JVH|1|X|G|1913
5JVH|1|X|U|1914
5JVH|1|X|A|1915
5JVH|1|X|G|1916
*
5JVH|1|X|C|1950
5JVH|1|X|G|1951
5JVH|1|X|A|1952
5JVH|1|X|A|1953
5JVH|1|X|A|1954
5JVH|1|X|G|1955

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2