J3_5JVH_015

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAGAGAACC

Length

28 nucleotides

Bulged bases

5JVH|1|X|G|514, 5JVH|1|X|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JVH_015 not in the Motif Atlas

Homologous match to J3_7A0S_015

Geometric discrepancy: 0.0735

The information below is about J3_7A0S_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.2

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

5JVH|1|X|G|30
5JVH|1|X|C|31
*
5JVH|1|X|G|485
5JVH|1|X|U|486
5JVH|1|X|G|487
5JVH|1|X|A|488
5JVH|1|X|A|489
5JVH|1|X|A|490
5JVH|1|X|A|491
5JVH|1|X|G|492
5JVH|1|X|A|493
5JVH|1|X|A|494
5JVH|1|X|C|495
*
5JVH|1|X|G|506
5JVH|1|X|A|507
5JVH|1|X|G|508
5JVH|1|X|U|509
5JVH|1|X|G|510
5JVH|1|X|A|511
5JVH|1|X|A|512
5JVH|1|X|A|513
5JVH|1|X|G|514
5JVH|1|X|A|515
5JVH|1|X|G|516
5JVH|1|X|A|517
5JVH|1|X|A|518
5JVH|1|X|C|519
5JVH|1|X|C|520

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24