J3_5JVH_016
3D structure
- PDB id
- 5JVH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- CCUG*CGAUAGCGCAUAGUAC*GGAAAG
- Length
- 26 nucleotides
- Bulged bases
- 5JVH|1|X|U|34, 5JVH|1|X|U|460
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JVH_016 not in the Motif Atlas
- Homologous match to J3_7A0S_016
- Geometric discrepancy: 0.1166
- The information below is about J3_7A0S_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.2
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
5JVH|1|X|C|32
5JVH|1|X|C|33
5JVH|1|X|U|34
5JVH|1|X|G|35
*
5JVH|1|X|C|457
5JVH|1|X|G|458
5JVH|1|X|A|459
5JVH|1|X|U|460
5JVH|1|X|A|461
5JVH|1|X|G|462
5JVH|1|X|C|463
5JVH|1|X|G|464
5JVH|1|X|C|465
5JVH|1|X|A|466
5JVH|1|X|U|467
5JVH|1|X|A|468
5JVH|1|X|G|469
5JVH|1|X|U|470
5JVH|1|X|A|471
5JVH|1|X|C|472
*
5JVH|1|X|G|479
5JVH|1|X|G|480
5JVH|1|X|A|481
5JVH|1|X|A|482
5JVH|1|X|A|483
5JVH|1|X|G|484
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L4
- Chain N
- 50S ribosomal protein L20
- Chain Q
- 50S ribosomal protein L23
- Chain R
- 50S ribosomal protein L24
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