J3_5KCS_002

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAC*GAUAAGC*GAUUUC

Length

16 nucleotides

Bulged bases

5KCS|1|1A|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KCS|1|1A|G|55
5KCS|1|1A|A|56
5KCS|1|1A|C|57
*
5KCS|1|1A|G|70
5KCS|1|1A|A|71
5KCS|1|1A|U|72
5KCS|1|1A|A|73
5KCS|1|1A|A|74
5KCS|1|1A|G|75
5KCS|1|1A|C|76
*
5KCS|1|1A|G|110
5KCS|1|1A|A|111
5KCS|1|1A|U|112
5KCS|1|1A|U|113
5KCS|1|1A|U|114
5KCS|1|1A|C|115

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 12

50S ribosomal protein L29

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23