J3_5KCS_003

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5KCS|1|1A|U|686, 5KCS|1|1A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KCS_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1187

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5KCS|1|1A|U|683
5KCS|1|1A|G|684
5KCS|1|1A|A|685
5KCS|1|1A|U|686
5KCS|1|1A|C|687
5KCS|1|1A|U|688
5KCS|1|1A|A|689
*
5KCS|1|1A|U|773
5KCS|1|1A|G|774
5KCS|1|1A|G|775
*
5KCS|1|1A|C|791
5KCS|1|1A|A|792
5KCS|1|1A|A|793
5KCS|1|1A|A|794

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1D

50S ribosomal protein L2