J3_5KCS_009
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUAAU*AGGUUAG*CAUAAG
- Length
- 18 nucleotides
- Bulged bases
- 5KCS|1|1A|U|2334, 5KCS|1|1A|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5KCS_009 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.2115
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
5KCS|1|1A|C|2295
5KCS|1|1A|U|2296
5KCS|1|1A|A|2297
5KCS|1|1A|A|2298
5KCS|1|1A|U|2299
*
5KCS|1|1A|A|2317
5KCS|1|1A|G|2318
5KCS|1|1A|G|2319
5KCS|1|1A|U|2320
5KCS|1|1A|U|2321
5KCS|1|1A|A|2322
5KCS|1|1A|G|2323
*
5KCS|1|1A|C|2332
5KCS|1|1A|A|2333
5KCS|1|1A|U|2334
5KCS|1|1A|A|2335
5KCS|1|1A|A|2336
5KCS|1|1A|G|2337
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1G
- 50S ribosomal protein L5
- Chain 1S
- 50S ribosomal protein L18
- Chain 1x
- Transfer RNA; tRNA
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