J3_5KCS_011

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGA*UCC*GAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KCS|1|1A|C|2789
5KCS|1|1A|U|2790
5KCS|1|1A|G|2791
5KCS|1|1A|A|2792
*
5KCS|1|1A|U|2804
5KCS|1|1A|C|2805
5KCS|1|1A|C|2806
*
5KCS|1|1A|G|2892
5KCS|1|1A|A|2893
5KCS|1|1A|G|2894

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1W

50S ribosomal protein L22