J3_5KCS_017

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KCS_017 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1418

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

5KCS|1|1a|C|936
5KCS|1|1a|A|937
5KCS|1|1a|A|938
5KCS|1|1a|G|939
*
5KCS|1|1a|C|1344
5KCS|1|1a|U|1345
5KCS|1|1a|A|1346
5KCS|1|1a|G|1347
5KCS|1|1a|U|1348
5KCS|1|1a|A|1349
5KCS|1|1a|A|1350
*
5KCS|1|1a|U|1372
5KCS|1|1a|G|1373
5KCS|1|1a|A|1374
5KCS|1|1a|A|1375
5KCS|1|1a|U|1376
5KCS|1|1a|A|1377
5KCS|1|1a|C|1378
5KCS|1|1a|G|1379

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1g

30S ribosomal protein S7

Chain 1i

30S ribosomal protein S9