J3_5KCS_027

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

5KCS|1|1A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KCS_027 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1533

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5KCS|1|1A|G|297
5KCS|1|1A|G|298
5KCS|1|1A|A|299
5KCS|1|1A|A|300
5KCS|1|1A|G|301
*
5KCS|1|1A|C|316
5KCS|1|1A|G|317
5KCS|1|1A|C|318
5KCS|1|1A|G|319
5KCS|1|1A|A|320
5KCS|1|1A|U|321
5KCS|1|1A|A|322
5KCS|1|1A|C|323
5KCS|1|1A|A|324
5KCS|1|1A|G|325
*
5KCS|1|1A|C|337
5KCS|1|1A|G|338
5KCS|1|1A|U|339
5KCS|1|1A|A|340
5KCS|1|1A|C|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24