J3_5KCS_028

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KCS_028 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1487

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

5KCS|1|1A|U|1344
5KCS|1|1A|C|1345
5KCS|1|1A|G|1346
5KCS|1|1A|A|1347
5KCS|1|1A|C|1348
5KCS|1|1A|C|1349
*
5KCS|1|1A|G|1382
5KCS|1|1A|A|1383
5KCS|1|1A|A|1384
5KCS|1|1A|A|1385
*
5KCS|1|1A|U|1402
5KCS|1|1A|A|1403

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23