J3_5KCS_033
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GACUUG*CGGAG*CGUUAAGUC
- Length
- 20 nucleotides
- Bulged bases
- 5KCS|1|1a|U|871, 5KCS|1|1a|A|873
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5KCS|1|1a|G|824
5KCS|1|1a|A|825
5KCS|1|1a|C|826
5KCS|1|1a|U|827
5KCS|1|1a|U|828
5KCS|1|1a|G|829
*
5KCS|1|1a|C|857
5KCS|1|1a|G|858
5KCS|1|1a|G|859
5KCS|1|1a|A|860
5KCS|1|1a|G|861
*
5KCS|1|1a|C|868
5KCS|1|1a|G|869
5KCS|1|1a|U|870
5KCS|1|1a|U|871
5KCS|1|1a|A|872
5KCS|1|1a|A|873
5KCS|1|1a|G|874
5KCS|1|1a|U|875
5KCS|1|1a|C|876
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1b
- 30S ribosomal protein S2
- Chain 1h
- 30S ribosomal protein S8
- Chain 1u
- 30S ribosomal protein S21
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