J3_5KCS_034
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCACAAG*CUAGUAA*UGAAUACGUUCCC
- Length
- 27 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5KCS|1|1a|G|933
5KCS|1|1a|C|934
5KCS|1|1a|A|935
5KCS|1|1a|C|936
5KCS|1|1a|A|937
5KCS|1|1a|A|938
5KCS|1|1a|G|939
*
5KCS|1|1a|C|1344
5KCS|1|1a|U|1345
5KCS|1|1a|A|1346
5KCS|1|1a|G|1347
5KCS|1|1a|U|1348
5KCS|1|1a|A|1349
5KCS|1|1a|A|1350
*
5KCS|1|1a|U|1372
5KCS|1|1a|G|1373
5KCS|1|1a|A|1374
5KCS|1|1a|A|1375
5KCS|1|1a|U|1376
5KCS|1|1a|A|1377
5KCS|1|1a|C|1378
5KCS|1|1a|G|1379
5KCS|1|1a|U|1380
5KCS|1|1a|U|1381
5KCS|1|1a|C|1382
5KCS|1|1a|C|1383
5KCS|1|1a|C|1384
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1g
- 30S ribosomal protein S7
- Chain 1i
- 30S ribosomal protein S9
- Chain 1v
- mRNA
- Chain 1x
- Transfer RNA; tRNA
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