J3_5KCS_035

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGGAG*CUAC*GGAAU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KCS|1|1a|G|942
5KCS|1|1a|U|943
5KCS|1|1a|G|944
5KCS|1|1a|G|945
5KCS|1|1a|A|946
5KCS|1|1a|G|947
*
5KCS|1|1a|C|1234
5KCS|1|1a|U|1235
5KCS|1|1a|A|1236
5KCS|1|1a|C|1237
*
5KCS|1|1a|G|1337
5KCS|1|1a|G|1338
5KCS|1|1a|A|1339
5KCS|1|1a|A|1340
5KCS|1|1a|U|1341

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1g

30S ribosomal protein S7

Chain 1i

30S ribosomal protein S9

Chain 1m

30S ribosomal protein S13

Chain 1x

Transfer RNA; tRNA