J3_5KPV_016

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5KPV|1|27|U|686, 5KPV|1|27|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPV_016 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1284

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5KPV|1|27|U|683
5KPV|1|27|G|684
5KPV|1|27|A|685
5KPV|1|27|U|686
5KPV|1|27|C|687
5KPV|1|27|U|688
5KPV|1|27|A|689
*
5KPV|1|27|U|773
5KPV|1|27|G|774
5KPV|1|27|G|775
*
5KPV|1|27|C|791
5KPV|1|27|A|792
5KPV|1|27|A|793
5KPV|1|27|A|794

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L34

Chain A

50S ribosomal protein L2

Chain C

50S ribosomal protein L4